Welcome to SoundShape | Select your acoustic units using Raven Pro Software | Introduction on eigensound analysis | Installation | Citation | Workflow using SoundShape package | 1. Definition of homologous acoustic units | 2. Create folder to store acoustic units | 3. Select and store acoustic units as separate ".wav" files | 4. Three steps that avoid errors and biased results | 4.1 Define dimensions for the sound window | 4.2 Alignment of acoustic units at the beginning of a sound window | 4.3 Set relative amplitude background | 5. Define sampling grid and run eigensound | 5.1 Run eigensound function | 6. Principal Components Analysis | 6.1 Hypothetical sound shape configurations from semilandmark data | 6.2 Ordination plot with pca.plot function | 7. Interpreting the outputs of SoundShape | References
Package: SoundShape 1.3.1
SoundShape: Sound Waves Onto Morphometric Data
Implement a promising, and yet little explored protocol for bioacoustical analysis, the eigensound method by MacLeod, Krieger and Jones (2013) <doi:10.4404/hystrix-24.1-6299>. Eigensound is a multidisciplinary method focused on the direct comparison between stereotyped sounds from different species. 'SoundShape', in turn, provide the tools required for anyone to go from sound waves to Principal Components Analysis, using tools extracted from traditional bioacoustics (i.e. 'tuneR' and 'seewave' packages), geometric morphometrics (i.e. 'geomorph' package) and multivariate analysis (e.g. 'stats' package). For more information, please see Rocha and Romano (2021) and check 'SoundShape' repository on GitHub for news and updates <https://github.com/p-rocha/SoundShape>.
Authors:
SoundShape_1.3.1.tar.gz
SoundShape_1.3.1.zip(r-4.7-any)SoundShape_1.3.1.zip(r-4.6-any)SoundShape_1.3.1.zip(r-4.5-any)
SoundShape_1.3.1.tgz(r-4.6-any)SoundShape_1.3.1.tgz(r-4.5-any)
SoundShape_1.3.1.tar.gz(r-4.7-any)SoundShape_1.3.1.tar.gz(r-4.6-any)
SoundShape_1.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SoundShape/json (API)
| # Install 'SoundShape' in R: |
| install.packages('SoundShape', repos = c('https://p-rocha.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/p-rocha/soundshape/issues
Datasets:
- centralis - Vocalization of the frog _Physalaemus centralis_
- cuvieri - Vocalization of the frog _Physalaemus cuvieri_
- eig.sample - Sample of 3D point coordinates (semilandmarks) acquired with 'eigensound' function
- kroyeri - Vocalization of the frog _Physalaemus kroyeri_
- raven.list - Sample of tables containing selection boxes from Raven Pro software
Last updated from:c4d1d64cd6. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 152 | ||
| source / vignettes | OK | 283 | ||
| linux-release-x86_64 | NOTE | 156 | ||
| macos-release-arm64 | NOTE | 134 | ||
| macos-oldrel-arm64 | NOTE | 167 | ||
| windows-devel | NOTE | 81 | ||
| windows-release | NOTE | 154 | ||
| windows-oldrel | NOTE | 83 | ||
| wasm-release | OK | 137 |
Exports:align.waveeigensoundhypo.surfpca.plotraven.to.wavethreeDspectro
Dependencies:abindapeaskpassbase64encbootbslibcachemclicpp11crosstalkcurldata.tabledigestdplyrevaluatefarverfastmapfontawesomefsgenericsgeomorphggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjpegjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixmemoisemimeminqamisc3dnlmenloptropensslotelpillarpkgconfigplot3DplotlyplyrpromisespurrrR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasreshape2rlangrmarkdownRRPPS7sassscalesseewavesignalstringistringrsystibbletidyrtidyselecttinytextuneRutf8vctrsviridisLitewithrxfunyaml
